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LOC8054891 B-box zinc finger protein 18 [ Sorghum bicolor (sorghum) ]

Gene ID: 8054891, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8054891
Gene description
B-box zinc finger protein 18
Locus tag
SORBI_3002G273300
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8054891 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 2 NC_012871.2 (65643566..65646920)

Chromosome 2 - NC_012871.2Genomic Context describing neighboring genes Neighboring gene 30S ribosomal protein S31, mitochondrial Neighboring gene kinesin-like protein KIN-7J Neighboring gene auxin-responsive protein IAA26 Neighboring gene endoglucanase 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012871.2 Chromosome 2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in photomorphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B-box zinc finger protein 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012871.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    65643566..65646920
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002460513.2 → XP_002460558.1  B-box zinc finger protein 18

    See identical proteins and their annotated locations for XP_002460558.1

    UniProtKB/TrEMBL
    A0A921RR47, C5X660
    Conserved Domains (1) summary
    cd19821
    Location:4 → 47
    Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials