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TRAF3IP3 TRAF3 interacting protein 3 [ Homo sapiens (human) ]

Gene ID: 80342, updated on 2-Nov-2024

Summary

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Official Symbol
TRAF3IP3provided by HGNC
Official Full Name
TRAF3 interacting protein 3provided by HGNC
Primary source
HGNC:HGNC:30766
See related
Ensembl:ENSG00000009790 MIM:608255; AllianceGenome:HGNC:30766
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
T3JAM
Summary
The gene encodes a protein that mediates cell growth by modulating the c-Jun N-terminal kinase signal transduction pathway. The encoded protein may also interact with a large multi-protein assembly containing the phosphatase 2A catalytic subunit. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2013]
Expression
Biased expression in lymph node (RPKM 18.7), spleen (RPKM 13.0) and 9 other tissues See more
Orthologs
mouse all
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Genomic context

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See TRAF3IP3 in Genome Data Viewer
Location:
1q32.2
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (209756053..209782310)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (209002813..209029078)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (209929398..209955655)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene HSD11B1 antisense RNA 1 Neighboring gene hydroxysteroid 11-beta dehydrogenase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2471 Neighboring gene adenosine A2b receptor pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2472 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2473 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2474 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2475 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:209944889-209945388 Neighboring gene MPRA-validated peak675 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209957609-209958226 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209958227-209958842 Neighboring gene chromosome 1 open reading frame 74 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:209979409-209979752 Neighboring gene interferon regulatory factor 6 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2681 Neighboring gene VISTA enhancer hs932 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2477 Neighboring gene Sharpr-MPRA regulatory region 1786 Neighboring gene UTP25 small subunit processome component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The variants in PTPRB, TRAF3IP3, and DISC1 genes were associated with Graves' disease in the Chinese population.
    Title: The variants in PTPRB, TRAF3IP3, and DISC1 genes were associated with Graves' disease in the Chinese population.
  2. Novel germline TRAF3IP3 mutation in a dyad with familial acute B lymphoblastic leukemia.
    Title: Novel germline TRAF3IP3 mutation in a dyad with familial acute B lymphoblastic leukemia.
  3. High TRAF3IP3 Level Predicts Poor Prognosis of Patients with Gliomas.
    Title: High TRAF3IP3 Level Predicts Poor Prognosis of Patients with Gliomas.
  4. Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.
    Title: Secondary Genome-Wide Association Study Using Novel Analytical Strategies Disentangle Genetic Components of Cleft Lip and/or Cleft Palate in 1q32.2.
  5. Findings uncover TRAF3IP3 as an important regulator for RIG-I-MAVS signaling, which bridges MAVS and TRAF3 for an effective antiviral innate immune response.
    Title: TRAF3IP3 mediates the recruitment of TRAF3 to MAVS for antiviral innate immunity.
  6. Tumor microarray analysis on 23 primary melanoma and nine positive lymph nodes revealed that 70% of human primary melanoma and 66% of lymph node metastases were positive for TRAF3IP3. Immunohistochemistry analysis of the tumors revealed that TRAF3IP3-shRNA tumors had increased apoptosis and reduced microvascular density.
    Title: TRAF3-interacting protein 3, a new oncotarget, promotes tumor growth in melanoma.
  7. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
    Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
  8. This paper provides an alignment of the mouse and human proteins.
    Title: T3JAM, a novel protein that specifically interacts with TRAF3 and promotes the activation of JNK(1).
  9. TRAF3IP3 stimulated cell growth by modulating the c-Jun N-terminal kinase (JNK) pathway
    Title: Identification of five human novel genes associated with cell proliferation by cell-based screening from an expressed cDNA ORF library.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
Vif vif HIV-1 Vif downregulates the expression of TRAF3 interacting protein 3 (TRAF3IP3) in Vif-expression T cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ44151, MGC117354, MGC163289

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular adaptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables molecular adaptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein-macromolecule adaptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic pattern recognition receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cytoplasmic pattern recognition receptor signaling pathway IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of type I interferon production IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TRAF3-interacting JNK-activating modulator
Names
TRAF3 interacting Jun N terminal kinase (JNK) activating modulator

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033934.1 RefSeqGene

    Range
    5022..31279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001287754.2 → NP_001274683.1  TRAF3-interacting JNK-activating modulator isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks several exons, uses an alternate 5'-terminal exon, initiates translation at a downstream start codon, and its 3'-terminal exon extends past a splice site that is used in variant 1. The encoded isoform (2) has a shorter N-terminus and a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    BC110302, BQ277340, BX648450, CB053101
    Consensus CDS
    CCDS73023.1
    UniProtKB/TrEMBL
    B1AJU2
    Related
    ENSP00000355990.1, ENST00000367023.5
    Conserved Domains (1) summary
    COG4372
    Location:3 → 142
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]

  2. NM_001320143.2 → NP_001307072.1  TRAF3-interacting JNK-activating modulator isoform 1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1 and 4 both encode the same isoform (1).
    Source sequence(s)
    AK122792, AK125601, AL022398
    Consensus CDS
    CCDS1490.2
    UniProtKB/Swiss-Prot
    A1L464, A6NIU9, Q2YDB5, Q4VY06, Q7Z706, Q9Y228
    UniProtKB/TrEMBL
    B3KWQ9
    Related
    ENSP00000355991.1, ENST00000367024.5
    Conserved Domains (1) summary
    COG1196
    Location:201 → 517
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. NM_001320144.2 → NP_001307073.1  TRAF3-interacting JNK-activating modulator isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) uses an alternate in-frame splice junction compared to variant 1. The resulting isoform (4) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AL049667, AL558384
    Consensus CDS
    CCDS81422.1
    UniProtKB/TrEMBL
    B3KWQ9
    Related
    ENSP00000355993.3, ENST00000367026.7
    Conserved Domains (1) summary
    COG1196
    Location:181 → 497
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. NM_025228.4 → NP_079504.2  TRAF3-interacting JNK-activating modulator isoform 1

    See identical proteins and their annotated locations for NP_079504.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1 and 4 both encode the same isoform (1).
    Source sequence(s)
    AK312755, AL558384, BX648450
    Consensus CDS
    CCDS1490.2
    UniProtKB/Swiss-Prot
    A1L464, A6NIU9, Q2YDB5, Q4VY06, Q7Z706, Q9Y228
    UniProtKB/TrEMBL
    B3KWQ9
    Related
    ENSP00000355992.3, ENST00000367025.8
    Conserved Domains (1) summary
    COG1196
    Location:201 → 517
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RNA

  1. NR_109871.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks an internal exon and its 3'-terminal exon extends past a splice site that is used in variant 1. This variant is represented as non-coding because the use of the 5'-most [supported/expected] translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK312755, AL558384, BC110302, BX648450, CB053101
    Related
    ENST00000478359.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    209756053..209782310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047430963.1 → XP_047286919.1  TRAF3-interacting JNK-activating modulator isoform X2

  2. XM_011510018.4 → XP_011508320.1  TRAF3-interacting JNK-activating modulator isoform X4

    Related
    ENSP00000383743.3, ENST00000400959.7
    Conserved Domains (1) summary
    COG1196
    Location:242 → 419
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_047430964.1 → XP_047286920.1  TRAF3-interacting JNK-activating modulator isoform X3

  4. XM_017002400.3 → XP_016857889.1  TRAF3-interacting JNK-activating modulator isoform X1

  5. XM_011510019.3 → XP_011508321.1  TRAF3-interacting JNK-activating modulator isoform X5

    UniProtKB/TrEMBL
    B4DU99

  6. XM_047430976.1 → XP_047286932.1  TRAF3-interacting JNK-activating modulator isoform X7

  7. XM_005273279.6 → XP_005273336.1  TRAF3-interacting JNK-activating modulator isoform X6

    See identical proteins and their annotated locations for XP_005273336.1

    Conserved Domains (1) summary
    COG4372
    Location:3 → 142
    COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    209002813..209029078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054338875.1 → XP_054194850.1  TRAF3-interacting JNK-activating modulator isoform X2

  2. XM_054338876.1 → XP_054194851.1  TRAF3-interacting JNK-activating modulator isoform X3

  3. XM_054338877.1 → XP_054194852.1  TRAF3-interacting JNK-activating modulator isoform X4

  4. XM_054338878.1 → XP_054194853.1  TRAF3-interacting JNK-activating modulator isoform X8

    UniProtKB/TrEMBL
    E2QRE5

  5. XM_054338874.1 → XP_054194849.1  TRAF3-interacting JNK-activating modulator isoform X1

  6. XM_054338879.1 → XP_054194854.1  TRAF3-interacting JNK-activating modulator isoform X5

  7. XM_054338881.1 → XP_054194856.1  TRAF3-interacting JNK-activating modulator isoform X7

  8. XM_054338880.1 → XP_054194855.1  TRAF3-interacting JNK-activating modulator isoform X6

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9Y228.2 GenPept UniProtKB/Swiss-Prot:Q9Y228

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