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ABCA11P ATP binding cassette subfamily A member 11, pseudogene [ Homo sapiens (human) ]

Gene ID: 79963, updated on 16-Jan-2024

Summary

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Official Symbol
ABCA11Pprovided by HGNC
Official Full Name
ATP binding cassette subfamily A member 11, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:31
See related
Ensembl:ENSG00000293360 AllianceGenome:HGNC:31
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ABCA11; EST1133530
Expression
Ubiquitous expression in skin (RPKM 4.6), brain (RPKM 4.5) and 25 other tissues See more
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Genomic context

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See ABCA11P in Genome Data Viewer
Location:
4p16.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (425435..474209, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (418830..467592, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (419224..467998, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene zinc finger protein 141 Neighboring gene microRNA 571 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:388927-389606 Neighboring gene zinc finger protein 519 pseudogene 4 Neighboring gene HERV-FRD provirus ancestral Env polyprotein pseudogene Neighboring gene zinc finger protein 721 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:459400-459596 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21127 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15098 Neighboring gene HERV-FRD provirus ancestral Env polyprotein pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:492231-493096 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:493097-493960 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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General gene information

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Markers

Other Names

  • ATP-binding cassette, sub-family A (ABC1), member 11 (pseudogene)

Clone Names

  • FLJ14297, FLJ57767, MGC120309, MGC120310, MGC120312, MGC132744, MGC138274

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002451.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK024359, BC098259, DA501191
    Related
    ENST00000451020.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    425435..474209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    418830..467592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_024903.1: Suppressed sequence

    Description
    NM_024903.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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