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ubac1 UBA domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 795038, updated on 12-Sep-2024

Summary

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Official Symbol
ubac1provided by ZNC
Official Full Name
UBA domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9372
See related
Ensembl:ENSDARG00000059722 AllianceGenome:ZFIN:ZDB-GENE-030131-9372
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj67a11; wu:fj67a11; si:dkey-1o2.1; si:dkey-5f20.1
Summary
Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm. Orthologous to human UBAC1 (UBA domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See ubac1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (51226846..51243882)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (50579754..50597289)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene small nuclear RNA activating complex, polypeptide 4 Neighboring gene endosome associated trafficking regulator 1 Neighboring gene mutS homolog 3 (E. coli) Neighboring gene Ras protein-specific guanine nucleotide-releasing factor 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ubiquitin-associated domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110283.2 → NP_001103753.2  ubiquitin-associated domain-containing protein 1

    See identical proteins and their annotated locations for NP_001103753.2

    Status: PROVISIONAL

    Source sequence(s)
    BC155333
    UniProtKB/TrEMBL
    A0A8M1NF33, A9JTG7
    Related
    ENSDARP00000077775.3, ENSDART00000083340.5
    Conserved Domains (4) summary
    smart00727
    Location:363 → 402
    STI1; Heat shock chaperonin-binding motif
    cd14303
    Location:195 → 231
    UBA1_KPC2; UBA1 domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins
    cd14304
    Location:299 → 337
    UBA2_KPC2; UBA2 domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins
    cl00155
    Location:14 → 90
    UBQ; Ubiquitin-like proteins

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    51226846..51243882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476322.2 → XP_021331997.1  ubiquitin-associated domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PKK5
    Conserved Domains (5) summary
    smart00727
    Location:364 → 403
    STI1; Heat shock chaperonin-binding motif
    cd14303
    Location:195 → 231
    UBA1_KPC2; UBA1 domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins
    cd14304
    Location:301 → 338
    UBA2_KPC2; UBA2 domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins
    cl00155
    Location:14 → 90
    UBQ; Ubiquitin-like proteins
    cl02553
    Location:195 → 346
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  2. XM_021476324.2 → XP_021331999.1  ubiquitin-associated domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8M9Q3S1
    Conserved Domains (5) summary
    smart00727
    Location:362 → 401
    STI1; Heat shock chaperonin-binding motif
    cd14303
    Location:193 → 229
    UBA1_KPC2; UBA1 domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins
    cd14304
    Location:299 → 336
    UBA2_KPC2; UBA2 domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins
    cl00155
    Location:14 → 90
    UBQ; Ubiquitin-like proteins
    cl02553
    Location:193 → 344
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  3. XM_068221319.1 → XP_068077420.1  ubiquitin-associated domain-containing protein 1 isoform X5

    Related
    ENSDARP00000115260.1, ENSDART00000138210.3

  4. XM_021476323.2 → XP_021331998.1  ubiquitin-associated domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PY40
    Conserved Domains (5) summary
    smart00727
    Location:363 → 402
    STI1; Heat shock chaperonin-binding motif
    cd14303
    Location:194 → 230
    UBA1_KPC2; UBA1 domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins
    cd14304
    Location:300 → 337
    UBA2_KPC2; UBA2 domain found in Kip1 ubiquitination-promoting complex protein 2 (KPC2) and similar proteins
    cl00155
    Location:14 → 90
    UBQ; Ubiquitin-like proteins
    cl02553
    Location:194 → 345
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  5. XM_068221318.1 → XP_068077419.1  ubiquitin-associated domain-containing protein 1 isoform X3

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394611.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    40999..54715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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