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si:ch211-132p1.2 si:ch211-132p1.2 [ Danio rerio (zebrafish) ]

Gene ID: 793315, updated on 2-Nov-2024

Summary

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Official Symbol
si:ch211-132p1.2provided by ZNC
Official Full Name
si:ch211-132p1.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-869
See related
Ensembl:ENSDARG00000079399 AllianceGenome:ZFIN:ZDB-GENE-130530-869
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
f2rl3
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Orthologous to human F2RL3 (F2R like thrombin or trypsin receptor 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See si:ch211-132p1.2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (36869304..36875692)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (36528991..36535407)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene tryptophan 2,3-dioxygenase a Neighboring gene cathepsin O Neighboring gene ring finger protein 130 Neighboring gene leukocyte cell derived chemotaxin 2, tandem duplicate 1 Neighboring gene leukocyte cell derived chemotaxin 2, tandem duplicate 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
proteinase-activated receptor 4
Names
coagulation factor II (thrombin) receptor-like 3
zmp:0000000866

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    36869304..36875692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009291214.4 → XP_009289489.1  proteinase-activated receptor 4

    See identical proteins and their annotated locations for XP_009289489.1

    UniProtKB/TrEMBL
    A0A8M3AGU0, E7FDD1
    Related
    ENSDARP00000098661.2, ENSDART00000111674.5
    Conserved Domains (1) summary
    pfam00001
    Location:78 → 320
    7tm_1; 7 transmembrane receptor (rhodopsin family)
Nucleotide Protein Strain
Heading Accession and Version

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