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Msantd4 Myb/SANT-like DNA-binding domain containing 4 with coiled-coils [ Mus musculus (house mouse) ]

Gene ID: 78100, updated on 2-Nov-2024

Summary

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Official Symbol
Msantd4provided by MGI
Official Full Name
Myb/SANT-like DNA-binding domain containing 4 with coiled-coilsprovided by MGI
Primary source
MGI:MGI:1925350
See related
Ensembl:ENSMUSG00000041124 AllianceGenome:MGI:1925350
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mysantd4; 8430410K20Rik
Summary
Predicted to be located in nucleus. Orthologous to human MSANTD4 (Myb/SANT DNA binding domain containing 4 with coiled-coils). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in CNS E11.5 (RPKM 18.0), bladder adult (RPKM 11.7) and 21 other tissues See more
Orthologs
human all
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Genomic context

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See Msantd4 in Genome Data Viewer
Location:
9 A1; 9 2.46 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (4376552..4386890)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (4376552..4386890)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:4309539-4309751 Neighboring gene aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase Neighboring gene STARR-seq mESC enhancer starr_23158 Neighboring gene kelch repeat and BTB (POZ) domain containing 3 Neighboring gene STARR-positive B cell enhancer ABC_E2280 Neighboring gene predicted gene, 53495 Neighboring gene glutamate receptor, ionotropic, AMPA4 (alpha 4) Neighboring gene STARR-seq mESC enhancer starr_23160 Neighboring gene predicted gene, 46101 Neighboring gene STARR-seq mESC enhancer starr_23161 Neighboring gene predicted gene, 46100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
  2. Identification of 14-3-3epsilon substrates from embryonic murine brain. Ballif BA, et al. J Proteome Res, 2006 Sep. PMID 16944949
  3. Lysosomal Signaling Licenses Embryonic Stem Cell Differentiation via Inactivation of Tfe3. Villegas F, et al. Cell Stem Cell, 2019 Feb 7. PMID 30595499
  4. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
myb/SANT-like DNA-binding domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145609.2 → NP_663584.1  myb/SANT-like DNA-binding domain-containing protein 4

    See identical proteins and their annotated locations for NP_663584.1

    Status: VALIDATED

    Source sequence(s)
    AI851587, AK032884, BQ552041, CT030685
    Consensus CDS
    CCDS22796.1
    UniProtKB/Swiss-Prot
    Q91YU3
    Related
    ENSMUSP00000148805.2, ENSMUST00000212075.2
    Conserved Domains (2) summary
    pfam13873
    Location:8 → 86
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    cl25732
    Location:207 → 342
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    4376552..4386890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91YU3.1 GenPept UniProtKB/Swiss-Prot:Q91YU3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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