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LOC780537 telomere repeat-binding factor 4 [ Glycine max (soybean) ]

Gene ID: 780537, updated on 7-Dec-2023

Summary

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Gene symbol
LOC780537
Gene description
telomere repeat-binding factor 4
Locus tag
GLYMA_07G007200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
MYB91
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Genomic context

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See LOC780537 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 7 NC_038243.2 (536713..540802)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 7 NC_038243.1 (536399..540627)

Chromosome 7 - NC_038243.2Genomic Context describing neighboring genes Neighboring gene lipoxygenase Neighboring gene linoleate 9S-lipoxygenase-like Neighboring gene glycylpeptide N-tetradecanoyltransferase 1 Neighboring gene eukaryotic initiation factor 4A-10 Neighboring gene small nucleolar RNA snoR98

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telomere repeat-binding factor 4
Names
MYB transcription factor MYB91

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038243.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    536713..540802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003529658.5 → XP_003529706.1  telomere repeat-binding factor 4 isoform X1

    See identical proteins and their annotated locations for XP_003529706.1

    UniProtKB/TrEMBL
    I1KG92, Q0PJH2
    Conserved Domains (2) summary
    smart00526
    Location:121 → 180
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  2. XM_006582937.4 → XP_006583000.1  telomere repeat-binding factor 4 isoform X2

    UniProtKB/TrEMBL
    K7KYV9, Q0PJH2
    Conserved Domains (2) summary
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    cl00073
    Location:121 → 150
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
Nucleotide Protein
Heading Accession and Version

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