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sgcg sarcoglycan gamma [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780370, updated on 17-Aug-2024

Summary

Official Symbol
sgcgprovided by Xenbase
Official Full Name
sarcoglycan gammaprovided by Xenbase
Primary source
Xenbase:XB-GENE-956423
See related
Ensembl:ENSXETG00000034541
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
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Genomic context

See sgcg in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (157013762..157124209, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (153953294..154059222, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily member 19 Neighboring gene sacsin molecular chaperone Neighboring gene fibroblast growth factor 9 Neighboring gene mitochondrial calcium uptake 2

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC146504

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
gamma-sarcoglycan
Names
gamma sarcoglycan
sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079440.1NP_001072908.1  gamma-sarcoglycan

    See identical proteins and their annotated locations for NP_001072908.1

    Status: PROVISIONAL

    Source sequence(s)
    BC122992
    UniProtKB/TrEMBL
    A0A803J3Y9, Q0IHS4
    Related
    ENSXETP00000102548.1, ENSXETT00000122767.1
    Conserved Domains (1) summary
    pfam04790
    Location:26284
    Sarcoglycan_1; Sarcoglycan complex subunit protein

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    157013762..157124209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031896161.1XP_031752021.1  gamma-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6I8QTG9, A0A803J3Y9
    Related
    ENSXETP00000072494.1, ENSXETT00000100362.2
  2. XM_031896162.1XP_031752022.1  gamma-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A803J3Y9, A0A8J1J2F5
    Conserved Domains (1) summary
    pfam04790
    Location:42300
    Sarcoglycan_1; Sarcoglycan complex subunit protein
  3. XM_018091369.2XP_017946858.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A803J3Y9, Q0IHS4
    Related
    ENSXETP00000085863.2, ENSXETT00000079778.2
    Conserved Domains (1) summary
    pfam04790
    Location:26284
    Sarcoglycan_1; Sarcoglycan complex subunit protein
  4. XM_012957334.3XP_012812788.1  gamma-sarcoglycan isoform X1

    See identical proteins and their annotated locations for XP_012812788.1

    UniProtKB/TrEMBL
    A0A803J3Y9, Q0IHS4
    Conserved Domains (1) summary
    pfam04790
    Location:26284
    Sarcoglycan_1; Sarcoglycan complex subunit protein