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calb1 calbindin 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780272, updated on 17-Aug-2024

Summary

Official Symbol
calb1provided by Xenbase
Official Full Name
calbindin 1provided by Xenbase
Primary source
Xenbase:XB-GENE-951983
See related
Ensembl:ENSXETG00000014607
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
calb; calb1-a; calb1-b; calbindin
Orthologs
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Genomic context

See calb1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (126363001..126396929, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (111362009..111395320, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene nibrin Neighboring gene 2,4-dienoyl-CoA reductase 1 Neighboring gene transmembrane protein 64 Neighboring gene N-terminal EF-hand calcium binding protein 1

Genomic regions, transcripts, and products

General protein information

Preferred Names
calbindin
Names
calbindin 1, 28kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079343.1NP_001072811.1  calbindin

    See identical proteins and their annotated locations for NP_001072811.1

    Status: PROVISIONAL

    Source sequence(s)
    BC121487
    UniProtKB/TrEMBL
    F6SN46, Q0V9L5
    Related
    ENSXETP00000031957.5, ENSXETT00000031957.5
    Conserved Domains (2) summary
    cd15902
    Location:1644
    EFh_HEF; EF-hand motif [structural motif]
    cl23634
    Location:16258
    EFh_HEF; EF-hand, calcium binding motif, found in the hexa-EF hand proteins family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    126363001..126396929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012964953.2XP_012820407.1  calbindin isoform X1

    See identical proteins and their annotated locations for XP_012820407.1

    UniProtKB/TrEMBL
    F6SN46, Q0V9L5
    Conserved Domains (2) summary
    cd15902
    Location:1644
    EFh_HEF; EF-hand motif [structural motif]
    cl23634
    Location:16258
    EFh_HEF; EF-hand, calcium binding motif, found in the hexa-EF hand proteins family