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boc BOC cell adhesion associated, oncogene regulated [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780199, updated on 4-Nov-2024

Summary

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Official Symbol
bocprovided by Xenbase
Official Full Name
BOC cell adhesion associated, oncogene regulatedprovided by Xenbase
Primary source
Xenbase:XB-GENE-923398
See related
Ensembl:ENSXETG00000012171 AllianceGenome:Xenbase:XB-GENE-923398
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Orthologous to human BOC (BOC cell adhesion associated, oncogene regulated). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See boc in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (2635315..2687488, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683597.1 (589..12556)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016684052.1 (15240..45016)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene calcium-sensing receptor Neighboring gene uncharacterized LOC101730943 Neighboring gene cilia and flagella associated protein 44 Neighboring gene mannosidase, alpha, class 1A, member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC146299

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
brother of CDO
Names
Boc homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079274.1 → NP_001072742.1  brother of CDO precursor

    See identical proteins and their annotated locations for NP_001072742.1

    Status: PROVISIONAL

    Source sequence(s)
    BC125730
    UniProtKB/TrEMBL
    A0A6I8RAK0, A0JM42
    Conserved Domains (7) summary
    smart00408
    Location:236 → 297
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:128 → 203
    IG; Immunoglobulin
    cd00063
    Location:586 → 673
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:474 → 539
    fn3; Fibronectin type III domain
    pfam07679
    Location:314 → 398
    I-set; Immunoglobulin I-set domain
    pfam16625
    Location:401 → 454
    ISET-FN3_linker; Unstructured linking region I-set and fnIII on Brother of CDO
    cd00096
    Location:313 → 316
    Ig; Ig strand A [structural motif]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    2635315..2687488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031896152.1 → XP_031752012.1  brother of CDO isoform X2

    UniProtKB/TrEMBL
    A0A6I8RAK0, A0A8J1J2E3
    Conserved Domains (7) summary
    smart00408
    Location:236 → 297
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:128 → 203
    IG; Immunoglobulin
    cd00063
    Location:585 → 672
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:474 → 538
    fn3; Fibronectin type III domain
    pfam07679
    Location:314 → 398
    I-set; Immunoglobulin I-set domain
    pfam16625
    Location:401 → 454
    ISET-FN3_linker; Unstructured linking region I-set and fnIII on Brother of CDO
    cd00096
    Location:313 → 316
    Ig; Ig strand A [structural motif]

  2. XM_031896153.1 → XP_031752013.1  brother of CDO isoform X3

    UniProtKB/TrEMBL
    A0A6I8RAK0, A0A6I8RUY5, F6VVR3, F7DLX3
    Related
    ENSXETP00000086559.2, ENSXETT00000090314.2
    Conserved Domains (7) summary
    smart00408
    Location:236 → 297
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:128 → 203
    IG; Immunoglobulin
    cd00063
    Location:586 → 673
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:474 → 539
    fn3; Fibronectin type III domain
    pfam07679
    Location:314 → 398
    I-set; Immunoglobulin I-set domain
    pfam16625
    Location:401 → 454
    ISET-FN3_linker; Unstructured linking region I-set and fnIII on Brother of CDO
    cd00096
    Location:313 → 316
    Ig; Ig strand A [structural motif]

  3. XM_031896151.1 → XP_031752011.1  brother of CDO isoform X1

    UniProtKB/TrEMBL
    A0A6I8RAK0, A0JM42
    Related
    ENSXETP00000026562.5, ENSXETT00000026562.5
    Conserved Domains (7) summary
    smart00408
    Location:236 → 297
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:128 → 203
    IG; Immunoglobulin
    cd00063
    Location:586 → 673
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:474 → 539
    fn3; Fibronectin type III domain
    pfam07679
    Location:314 → 398
    I-set; Immunoglobulin I-set domain
    pfam16625
    Location:401 → 454
    ISET-FN3_linker; Unstructured linking region I-set and fnIII on Brother of CDO
    cd00096
    Location:313 → 316
    Ig; Ig strand A [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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