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acp6 acid phosphatase 6, lysophosphatidic [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780193, updated on 4-Nov-2024

Summary

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Official Symbol
acp6provided by Xenbase
Official Full Name
acid phosphatase 6, lysophosphatidicprovided by Xenbase
Primary source
Xenbase:XB-GENE-994568
See related
Ensembl:ENSXETG00000016302 AllianceGenome:Xenbase:XB-GENE-994568
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable lysophosphatidic acid phosphatase activity. Predicted to be involved in lysobisphosphatidic acid metabolic process. Predicted to be active in mitochondrion. Orthologous to human ACP6 (acid phosphatase 6, lysophosphatidic). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See acp6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (8234820..8242071)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (4408415..4412860)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016689751.1 (290..1575)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene gap junction protein alpha 5 Neighboring gene BCL9 transcription coactivator Neighboring gene transmembrane serine protease 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC146066

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables lysophosphatidic acid phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in lysobisphosphatidic acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
lysophosphatidic acid phosphatase type 6
NP_001072736.1
XP_031752010.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079268.1 → NP_001072736.1  lysophosphatidic acid phosphatase type 6

    See identical proteins and their annotated locations for NP_001072736.1

    Status: PROVISIONAL

    Source sequence(s)
    BC125717
    UniProtKB/TrEMBL
    A0JM30, F6QD50
    Related
    ENSXETP00000068906.2, ENSXETT00000091262.2
    Conserved Domains (1) summary
    cd07061
    Location:42 → 373
    HP_HAP_like; Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    8234820..8242071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031896150.1 → XP_031752010.1  lysophosphatidic acid phosphatase type 6 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q8E3, F6QD50
    Conserved Domains (1) summary
    cd07061
    Location:42 → 373
    HP_HAP_like; Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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