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sycp3 synaptonemal complex protein 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779673, updated on 4-Nov-2024

Summary

Official Symbol
sycp3provided by Xenbase
Official Full Name
synaptonemal complex protein 3provided by Xenbase
Primary source
Xenbase:XB-GENE-5764718
See related
Ensembl:ENSXETG00000023270 AllianceGenome:Xenbase:XB-GENE-5764718
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
scp3
Summary
Human ortholog(s) of this gene implicated in spermatogenic failure 4. Orthologous to several human genes including SYCP3 (synaptonemal complex protein 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See sycp3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (9506581..9518425, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (2810843..2822710, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene adrenomedullin Neighboring gene leucine rich repeat containing 4C Neighboring gene uncharacterized LOC105948179 Neighboring gene tetratricopeptide repeat domain 17 Neighboring gene apoptosis inhibitor 5

Genomic regions, transcripts, and products

General protein information

Preferred Names
synaptonemal complex protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078758.1NP_001072226.1  synaptonemal complex protein 3

    See identical proteins and their annotated locations for NP_001072226.1

    Status: PROVISIONAL

    Source sequence(s)
    BC118809
    UniProtKB/TrEMBL
    A0A803JG21, F6Y8Y9, Q0VFJ2
    Related
    ENSXETP00000050283.3, ENSXETT00000050283.4
    Conserved Domains (1) summary
    pfam04803
    Location:86213
    Cor1; Cor1/Xlr/Xmr conserved region

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    9506581..9518425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)