snrnp35.L small nuclear ribonucleoprotein U11/U12 subunit 35 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: snrnp35.L
Official Full Name: small nuclear ribonucleoprotein U11/U12 subunit 35 L homeolog
Primary source: Xenbase:XB-GENE-940857
Locus tag: XELAEV_18007781mg
See related: EnsemblRapid:ENSXLAG00005034498
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: snrnp35; u1snrnpbp
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Genomic context

Location:: chromosome: 1L

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	1L	NC_054371.1 (174834600..174836665, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	1L	NC_030724.1 (161682895..161684956, complement)

Chromosome 1L - NC_054371.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	IEA Inferred from Electronic Annotation more info
enables snRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U12-type spliceosomal complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of precatalytic spliceosome	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: U11/U12 small nuclear ribonucleoprotein 35 kDa protein

Names: U1-snRNP binding protein homolog; U11/U12 snRNP 35 kDa protein; small nuclear ribonucleoprotein 35kDa (U11/U12); small nuclear ribonucleoprotein, U11/U12 35kDa subunit L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001096941.1 → NP_001090410.1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein

See identical proteins and their annotated locations for NP_001090410.1

Status: PROVISIONAL

Source sequence(s)

BC123361

UniProtKB/Swiss-Prot

Q05AT9

Conserved Domains (2) summary

COG0724
Location:18 → 126

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

cd12237
Location:48 → 137

RRM_snRNP35; RNA recognition motif found in U11/U12 small nuclear ribonucleoprotein 35 kDa protein (U11/U12-35K) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

174834600..174836665 complement

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GenBank, FASTA, Sequence Viewer (Graphics)