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ARF3 auxin response factor 3 [ Solanum lycopersicum (tomato) ]

Gene ID: 778363, updated on 9-Nov-2023

Summary

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Gene symbol
ARF3
Gene description
auxin response factor 3
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
SlARF3
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Genomic context

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See ARF3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 2 NC_015439.3 (43027873..43034581)
102 previous assembly SL2.50 (GCF_000188115.3) 2 NC_015439.2 (42460165..42466844)

Chromosome 2 - NC_015439.3Genomic Context describing neighboring genes Neighboring gene trans-resveratrol di-O-methyltransferase-like Neighboring gene uncharacterized LOC101249987 Neighboring gene MLO-like protein 12 Neighboring gene monothiol glutaredoxin-S9-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Auxin Response Gene SlARF3 Plays Multiple Roles in Tomato Development and is Involved in the Formation of Epidermal Cells and Trichomes. Zhang X, et al. Plant Cell Physiol, 2015 Nov. PMID 26412778
  2. The Interaction between DELLA and ARF/IAA Mediates Crosstalk between Gibberellin and Auxin Signaling to Control Fruit Initiation in Tomato. Hu J, et al. Plant Cell, 2018 Aug. PMID 30008445, Free PMC Article
  3. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247387.2 → NP_001234316.1  auxin response factor 3

    See identical proteins and their annotated locations for NP_001234316.1

    Status: VALIDATED

    Source sequence(s)
    BG734736, DB715989, DQ340254, ES891428
    UniProtKB/TrEMBL
    Q2LAJ4
    Conserved Domains (2) summary
    pfam02362
    Location:160 → 261
    B3; B3 DNA binding domain
    pfam06507
    Location:286 → 367
    Auxin_resp; Auxin response factor

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015439.3 Reference SL3.0 Primary Assembly

    Range
    43027873..43034581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010317585.3 → XP_010315887.1  auxin response factor 3 isoform X2

    Conserved Domains (2) summary
    pfam02362
    Location:159 → 260
    B3; B3 DNA binding domain
    pfam06507
    Location:285 → 366
    Auxin_resp; Auxin response factor

  2. XM_010317584.3 → XP_010315886.1  auxin response factor 3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7F3J7
    Conserved Domains (2) summary
    pfam02362
    Location:160 → 261
    B3; B3 DNA binding domain
    pfam06507
    Location:286 → 367
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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