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LOC7497869 protein NLP7 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7497869, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7497869
Gene description
protein NLP7
Locus tag
POPTR_003G143000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7497869 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 3 NC_037287.2 (15843548..15848638)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 3 NC_037287.1 (15956675..15961761)

Chromosome 3 - NC_037287.2Genomic Context describing neighboring genes Neighboring gene protein ABIL2 Neighboring gene cyclin-dependent kinase E-1 Neighboring gene bidirectional sugar transporter SWEET4 Neighboring gene protein KINESIN LIGHT CHAIN-RELATED 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NLP7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037287.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    15843548..15848638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024597876.2 → XP_024453644.1  protein NLP7

    UniProtKB/TrEMBL
    A0A2K2B726
    Conserved Domains (2) summary
    cd06407
    Location:905 → 985
    PB1_NLP; A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which ...
    pfam02042
    Location:595 → 643
    RWP-RK; RWP-RK domain
Nucleotide Protein
Heading Accession and Version

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