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LOC7496014 scarecrow-like protein 3 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7496014, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7496014
Gene description
scarecrow-like protein 3
Locus tag
POPTR_001G023500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7496014 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (1810774..1813595)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (1783721..1786587)

Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7496016 Neighboring gene probable inactive purple acid phosphatase 27 Neighboring gene dirigent protein 22 Neighboring gene uncharacterized LOC127904720

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scarecrow-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    1810774..1813595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002299182.4 → XP_002299218.1  scarecrow-like protein 3

    See identical proteins and their annotated locations for XP_002299218.1

    UniProtKB/TrEMBL
    A0A2K2BR77, B9GM40
    Conserved Domains (1) summary
    pfam03514
    Location:49 → 471
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version

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