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LOC7494132 common plant regulatory factor 1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7494132, updated on 10-Oct-2024

Summary

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Gene symbol
LOC7494132
Gene description
common plant regulatory factor 1
Locus tag
POPTR_014G094200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7494132 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
13
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 14 NC_037298.2 (6114725..6120637)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 14 NC_037298.1 (7344048..7349979)

Chromosome 14 - NC_037298.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7494131 Neighboring gene GDSL esterase/lipase At4g01130 Neighboring gene exosome complex component RRP41 homolog Neighboring gene NDR1/HIN1-like protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G-box-binding factor 3; common plant regulatory factor 1; transcriptional activator TAF-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037298.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    6114725..6120637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024585480.2 → XP_024441248.1  transcriptional activator TAF-1 isoform X6

    UniProtKB/TrEMBL
    A0A3N7G1V0
    Conserved Domains (4) summary
    smart00338
    Location:233 → 296
    BRLZ; basic region leucin zipper
    cd14702
    Location:237 → 286
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam07777
    Location:1 → 61
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:94 → 213
    MFMR_assoc; Disordered region downstream of MFMR

  2. XM_024585481.2 → XP_024441249.1  common plant regulatory factor 1 isoform X8

    UniProtKB/TrEMBL
    A0A3N7G1V0
    Conserved Domains (4) summary
    smart00338
    Location:265 → 328
    BRLZ; basic region leucin zipper
    cd14702
    Location:269 → 318
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam07777
    Location:1 → 93
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:126 → 245
    MFMR_assoc; Disordered region downstream of MFMR

  3. XM_024585474.2 → XP_024441242.1  common plant regulatory factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A3N7G1V0
    Conserved Domains (4) summary
    smart00338
    Location:265 → 328
    BRLZ; basic region leucin zipper
    cd14702
    Location:269 → 318
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam07777
    Location:1 → 93
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:126 → 245
    MFMR_assoc; Disordered region downstream of MFMR

  4. XM_024585476.2 → XP_024441244.1  common plant regulatory factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A3N7G1V0
    Conserved Domains (4) summary
    smart00338
    Location:260 → 323
    BRLZ; basic region leucin zipper
    cd14702
    Location:264 → 313
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam07777
    Location:1 → 93
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:126 → 240
    MFMR_assoc; Disordered region downstream of MFMR

  5. XM_024585479.2 → XP_024441247.1  G-box-binding factor 3 isoform X5

    UniProtKB/TrEMBL
    A0A3N7G1V0
    Conserved Domains (4) summary
    smart00338
    Location:233 → 296
    BRLZ; basic region leucin zipper
    cd14702
    Location:237 → 286
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam07777
    Location:1 → 93
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:126 → 213
    MFMR_assoc; Disordered region downstream of MFMR

  6. XM_024585475.2 → XP_024441243.1  common plant regulatory factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A3N7G1V0
    Conserved Domains (4) summary
    smart00338
    Location:265 → 328
    BRLZ; basic region leucin zipper
    cd14702
    Location:269 → 318
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam07777
    Location:1 → 93
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:126 → 245
    MFMR_assoc; Disordered region downstream of MFMR

  7. XM_052447078.1 → XP_052303038.1  G-box-binding factor 3 isoform X10

    UniProtKB/TrEMBL
    A0A3N7GVU6

  8. XM_024585477.2 → XP_024441245.1  common plant regulatory factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A3N7FZK4, A0A3N7G1V0
    Conserved Domains (4) summary
    smart00338
    Location:260 → 323
    BRLZ; basic region leucin zipper
    cd14702
    Location:264 → 313
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam07777
    Location:1 → 93
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:126 → 240
    MFMR_assoc; Disordered region downstream of MFMR

  9. XM_052447076.1 → XP_052303036.1  G-box-binding factor 3 isoform X7

    UniProtKB/TrEMBL
    A0A2K1XSY1

  10. XM_024585485.2 → XP_024441253.1  transcriptional activator TAF-1 isoform X9

    Conserved Domains (3) summary
    smart00338
    Location:200 → 263
    BRLZ; basic region leucin zipper
    cd14702
    Location:204 → 253
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam16596
    Location:61 → 180
    MFMR_assoc; Disordered region downstream of MFMR

  11. XM_024585483.2 → XP_024441251.1  transcriptional activator TAF-1 isoform X9

    Conserved Domains (3) summary
    smart00338
    Location:200 → 263
    BRLZ; basic region leucin zipper
    cd14702
    Location:204 → 253
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam16596
    Location:61 → 180
    MFMR_assoc; Disordered region downstream of MFMR
Nucleotide Protein
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