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LOC7493546 DELLA protein GAI [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7493546, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7493546
Gene description
DELLA protein GAI
Locus tag
POPTR_004G089800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7493546 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 4 NC_037288.2 (7661915..7664340, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 4 NC_037288.1 (7648328..7650448, complement)

Chromosome 4 - NC_037288.2Genomic Context describing neighboring genes Neighboring gene protein C2-DOMAIN ABA-RELATED 4 Neighboring gene protein PTST, chloroplastic-like Neighboring gene uncharacterized LOC7487377 Neighboring gene uncharacterized LOC7487376 Neighboring gene uncharacterized protein At5g03900, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hyperosmotic salinity response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in jasmonic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of gibberellic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of seed germination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of reactive oxygen species metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of seed dormancy process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to abscisic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in salicylic acid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DELLA protein GAI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037288.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    7661915..7664340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002305162.4 → XP_002305198.1  DELLA protein GAI

    See identical proteins and their annotated locations for XP_002305198.1

    UniProtKB/TrEMBL
    B9H380
    Conserved Domains (2) summary
    pfam03514
    Location:236 → 598
    GRAS; GRAS domain family
    pfam12041
    Location:43 → 108
    DELLA; Transcriptional regulator DELLA protein N terminal
Nucleotide Protein
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