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LOC7492930 agamous-like MADS-box protein AGL30 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7492930, updated on 6-Jun-2024

Summary

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Gene symbol
LOC7492930
Gene description
agamous-like MADS-box protein AGL30
Locus tag
POPTR_010G167300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7492930 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 10 NC_037294.2 (17030296..17036227, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 10 NC_037294.1 (17019814..17025751, complement)

Chromosome 10 - NC_037294.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112328775 Neighboring gene expansin-A1 Neighboring gene transcription termination factor MTEF1, chloroplastic Neighboring gene uncharacterized LOC7492931

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037294.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    17030296..17036227 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024610005.2 → XP_024465773.1  agamous-like MADS-box protein AGL30 isoform X2

    UniProtKB/TrEMBL
    A0A3N7FRM8
    Conserved Domains (1) summary
    cd00266
    Location:55 → 134
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  2. XM_024610004.2 → XP_024465772.1  agamous-like MADS-box protein AGL30 isoform X1

    UniProtKB/TrEMBL
    A0A2K1YVC7, A0A3N7FRM8
    Conserved Domains (1) summary
    cd00266
    Location:55 → 135
    MADS_SRF_like; SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in ...

  3. XM_052456529.1 → XP_052312489.1  agamous-like MADS-box protein AGL30 isoform X3

    UniProtKB/TrEMBL
    A0A3N7FMP7, A0A3N7FRM8

  4. XM_052456530.1 → XP_052312490.1  agamous-like MADS-box protein AGL30 isoform X3

    UniProtKB/TrEMBL
    A0A3N7FMP7, A0A3N7FRM8
Nucleotide Protein
Heading Accession and Version

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