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LOC7492280 ethylene-responsive transcription factor ERF017 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7492280, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7492280
Gene description
ethylene-responsive transcription factor ERF017
Locus tag
POPTR_006G218200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Also known as
RAP2L13
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Genomic context

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See LOC7492280 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 6 NC_037290.2 (22339271..22340382)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 6 NC_037290.1 (23060254..23061502)

Chromosome 6 - NC_037290.2Genomic Context describing neighboring genes Neighboring gene 3-ketoacyl-CoA synthase 10 Neighboring gene protein WHAT'S THIS FACTOR 1 homolog, chloroplastic Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene uncharacterized LOC7491975

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor ERF017
Names
RAP2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037290.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    22339271..22340382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002308472.3 → XP_002308508.1  ethylene-responsive transcription factor ERF017

    See identical proteins and their annotated locations for XP_002308508.1

    UniProtKB/TrEMBL
    A9PLA3
    Conserved Domains (1) summary
    smart00380
    Location:24 → 86
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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