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LOC7491882 bZIP transcription factor 16 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7491882, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7491882
Gene description
bZIP transcription factor 16
Locus tag
POPTR_003G097600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7491882 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 3 NC_037287.2 (12333972..12340920, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 3 NC_037287.1 (12415467..12422416, complement)

Chromosome 3 - NC_037287.2Genomic Context describing neighboring genes Neighboring gene UV-B-induced protein At3g17800, chloroplastic Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene protein IWS1 homolog 1 Neighboring gene uncharacterized LOC7456100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bZIP transcription factor 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037287.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    12333972..12340920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002304322.4 → XP_002304358.1  bZIP transcription factor 16

    See identical proteins and their annotated locations for XP_002304358.1

    UniProtKB/TrEMBL
    B9GZK1
    Conserved Domains (4) summary
    smart00338
    Location:303 → 367
    BRLZ; basic region leucin zipper
    cd14702
    Location:308 → 358
    bZIP_plant_GBF1; coiled coil [structural motif]
    pfam07777
    Location:1 → 96
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:135 → 270
    MFMR_assoc; Disordered region downstream of MFMR
Nucleotide Protein
Heading Accession and Version

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