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LOC7490922 homeobox protein HD1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7490922, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7490922
Gene description
homeobox protein HD1
Locus tag
POPTR_001G112200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7490922 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (9061791..9066945, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (8939331..8944311, complement)

Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase Neighboring gene phospholipase D beta 1 Neighboring gene uncharacterized LOC7490923 Neighboring gene agamous-like MADS-box protein AGL19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein HD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    9061791..9066945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002299533.4 → XP_002299569.2  homeobox protein HD1

    See identical proteins and their annotated locations for XP_002299569.2

    UniProtKB/TrEMBL
    A9P848, B9GKQ8
    Conserved Domains (3) summary
    pfam03790
    Location:37 → 75
    KNOX1; KNOX1 domain
    pfam03791
    Location:96 → 147
    KNOX2; KNOX2 domain
    pfam05920
    Location:244 → 283
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

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Research Materials