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LOC7490026 B3 domain-containing protein Os01g0234100 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7490026, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7490026
Gene description
B3 domain-containing protein Os01g0234100
Locus tag
POPTR_009G103400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7490026 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 9 NC_037293.2 (9097933..9102301, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 9 NC_037293.1 (9085808..9090230, complement)

Chromosome 9 - NC_037293.2Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein At3g19184 Neighboring gene B3 domain-containing protein Os01g0234100 Neighboring gene uncharacterized LOC7490025 Neighboring gene cyclin-dependent kinase inhibitor 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing protein Os01g0234100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037293.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    9097933..9102301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024607939.2 → XP_024463707.1  B3 domain-containing protein Os01g0234100 isoform X2

    UniProtKB/TrEMBL
    A0A2K1Z5T1
    Conserved Domains (1) summary
    cd10017
    Location:110 → 201
    B3_DNA; Plant-specific B3-DNA binding domain

  2. XM_002313074.4 → XP_002313110.1  B3 domain-containing protein Os01g0234100 isoform X1

    See identical proteins and their annotated locations for XP_002313110.1

    UniProtKB/TrEMBL
    B9HRZ4
    Conserved Domains (1) summary
    cd10017
    Location:110 → 201
    B3_DNA; Plant-specific B3-DNA binding domain
Nucleotide Protein
Heading Accession and Version

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