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LOC7488885 axial regulator YABBY 1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7488885, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7488885
Gene description
axial regulator YABBY 1
Locus tag
POPTR_014G066700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7488885 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 14 NC_037298.2 (4178952..4181896, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 14 NC_037298.1 (5424559..5427530, complement)

Chromosome 14 - NC_037298.2Genomic Context describing neighboring genes Neighboring gene transcription factor UNE10 Neighboring gene protein GRAVITROPIC IN THE LIGHT 1 Neighboring gene Golgi SNAP receptor complex member 1-2 Neighboring gene auxin-responsive protein SAUR36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in abaxial cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fruit development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in polarity specification of adaxial/abaxial axis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of leaf development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of shoot apical meristem development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
axial regulator YABBY 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037298.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    4178952..4181896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002320676.4 → XP_002320712.1  axial regulator YABBY 1

    See identical proteins and their annotated locations for XP_002320712.1

    UniProtKB/TrEMBL
    B9IBX2
    Conserved Domains (1) summary
    pfam04690
    Location:14 → 175
    YABBY; YABBY protein
Nucleotide Protein
Heading Accession and Version

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