U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC7488103 transcription factor bHLH68 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7488103, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC7488103
Gene description
transcription factor bHLH68
Locus tag
POPTR_018G083700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 18
Exon count:
9
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 18 NC_037302.2 (10134812..10138402, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 18 NC_037302.1 (11057971..11061496, complement)

Chromosome 18 - NC_037302.2Genomic Context describing neighboring genes Neighboring gene peroxiredoxin-2-like Neighboring gene putative E3 ubiquitin-protein ligase LIN-1 Neighboring gene uncharacterized LOC7488926 Neighboring gene polyprotein of EF-Ts, chloroplastic

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor bHLH68
Names
bHLH family protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037302.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    10134812..10138402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002324972.4 → XP_002325008.2  transcription factor bHLH68

    See identical proteins and their annotated locations for XP_002325008.2

    UniProtKB/TrEMBL
    A9PDK7, B9ILQ2
    Conserved Domains (1) summary
    cd00083
    Location:214 → 258
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials