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LOC7485941 transcription factor bHLH49 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7485941, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7485941
Gene description
transcription factor bHLH49
Locus tag
POPTR_008G113200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7485941 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 8 NC_037292.2 (7199649..7204347, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 8 NC_037292.1 (7225510..7230275, complement)

Chromosome 8 - NC_037292.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7483913 Neighboring gene putative pentatricopeptide repeat-containing protein At1g68930 Neighboring gene uncharacterized LOC127905697 Neighboring gene basic leucine zipper 43

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH49

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037292.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    7199649..7204347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024607876.2 → XP_024463644.1  transcription factor bHLH49 isoform X2

    UniProtKB/TrEMBL
    A0A2K1ZFK0
    Conserved Domains (1) summary
    smart00353
    Location:386 → 435
    HLH; helix loop helix domain

  2. XM_024607875.2 → XP_024463643.1  transcription factor bHLH49 isoform X1

    UniProtKB/TrEMBL
    A0A2K1ZFJ7
    Conserved Domains (1) summary
    smart00353
    Location:386 → 435
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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