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LOC7485004 putative zinc finger protein CONSTANS-LIKE 11 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7485004, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7485004
Gene description
putative zinc finger protein CONSTANS-LIKE 11
Locus tag
POPTR_007G121200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Also known as
COL9
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Genomic context

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See LOC7485004 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 7 NC_037291.2 (13896485..13899199, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 7 NC_037291.1 (13992201..13994969, complement)

Chromosome 7 - NC_037291.2Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 10 Neighboring gene cysteine-rich receptor-like protein kinase 44 Neighboring gene vegetative cell wall protein gp1 Neighboring gene uncharacterized LOC7486043

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative zinc finger protein CONSTANS-LIKE 11
Names
GATA-4/5/6 transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037291.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    13896485..13899199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024605130.2 → XP_024460898.1  putative zinc finger protein CONSTANS-LIKE 11

    UniProtKB/TrEMBL
    A0A3N7FCZ8, A0A3N7GRW2
    Conserved Domains (2) summary
    smart00336
    Location:4 → 47
    BBOX; B-Box-type zinc finger
    pfam06203
    Location:377 → 420
    CCT; CCT motif

  2. XM_024605131.2 → XP_024460899.1  putative zinc finger protein CONSTANS-LIKE 11

    UniProtKB/TrEMBL
    A0A3N7FCZ8, A0A3N7GRW2
    Conserved Domains (2) summary
    smart00336
    Location:4 → 47
    BBOX; B-Box-type zinc finger
    pfam06203
    Location:377 → 420
    CCT; CCT motif
Nucleotide Protein
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