U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC7484033 nuclear transcription factor Y subunit A-1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7484033, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC7484033
Gene description
nuclear transcription factor Y subunit A-1
Locus tag
POPTR_001G257600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC7484033 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 1 NC_037285.2 (27326681..27331644, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 1 NC_037285.1 (26690672..26695650, complement)

Chromosome 1 - NC_037285.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7485749 Neighboring gene translocation protein sec62 Neighboring gene uncharacterized LOC7465147 Neighboring gene uncharacterized LOC7480048

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nuclear transcription factor Y subunit A-1
Names
NF-YA family protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037285.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    27326681..27331644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002299870.4 → XP_002299906.1  nuclear transcription factor Y subunit A-1 isoform X1

    See identical proteins and their annotated locations for XP_002299906.1

    UniProtKB/TrEMBL
    B9GF01
    Conserved Domains (1) summary
    smart00521
    Location:168 → 228
    CBF; CCAAT-Binding transcription Factor

  2. XM_024598132.2 → XP_024453900.1  nuclear transcription factor Y subunit A-1 isoform X2

    Conserved Domains (1) summary
    pfam02045
    Location:165 → 220
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  3. XM_024598097.2 → XP_024453865.1  nuclear transcription factor Y subunit A-1 isoform X1

    UniProtKB/TrEMBL
    B9GF01
    Conserved Domains (1) summary
    smart00521
    Location:168 → 228
    CBF; CCAAT-Binding transcription Factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials