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LOC7482592 B3 domain-containing transcription repressor VAL2 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7482592, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7482592
Gene description
B3 domain-containing transcription repressor VAL2
Locus tag
POPTR_016G136500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Also known as
VP
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Genomic context

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See LOC7482592 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
13
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 16 NC_037300.2 (14040790..14049344, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 16 NC_037300.1 (13953876..13962301, complement)

Chromosome 16 - NC_037300.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18106358 Neighboring gene probable serine/threonine-protein kinase PBL1 Neighboring gene uncharacterized LOC7472473 Neighboring gene putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing transcription repressor VAL2
Names
MORC family ATPase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037300.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    14040790..14049344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002323633.4 → XP_002323669.3  B3 domain-containing transcription repressor VAL2

  2. XM_024588197.2 → XP_024443965.2  B3 domain-containing transcription repressor VAL2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials