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LOC7481436 squamosa promoter-binding-like protein 1 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7481436, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7481436
Gene description
squamosa promoter-binding-like protein 1
Locus tag
POPTR_002G188700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7481436 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 2 NC_037286.2 (15069488..15076282)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 2 NC_037286.1 (14849082..14855315)

Chromosome 2 - NC_037286.2Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene pto-interacting protein 1 Neighboring gene aspartic proteinase CDR1-like Neighboring gene pleiotropic drug resistance protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 1
Names
SBP family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037286.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    15069488..15076282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024594310.2 → XP_024450078.1  squamosa promoter-binding-like protein 1 isoform X1

    UniProtKB/TrEMBL
    B9GSZ5
    Conserved Domains (3) summary
    cd00204
    Location:779 → 886
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:779 → 825
    ANK; ANK repeat [structural motif]
    pfam03110
    Location:151 → 225
    SBP; SBP domain

  2. XM_024594312.2 → XP_024450080.1  squamosa promoter-binding-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I4KKA4
    Conserved Domains (3) summary
    cd00204
    Location:751 → 858
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:751 → 797
    ANK; ANK repeat [structural motif]
    pfam03110
    Location:151 → 225
    SBP; SBP domain
Nucleotide Protein
Heading Accession and Version

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