U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC7480707 transcription factor PIF4 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7480707, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC7480707
Gene description
transcription factor PIF4
Locus tag
POPTR_002G055400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC7480707 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 2 NC_037286.2 (3776435..3780679, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 2 NC_037286.1 (3705312..3709546, complement)

Chromosome 2 - NC_037286.2Genomic Context describing neighboring genes Neighboring gene protein NPG1 Neighboring gene polyamine oxidase 2 Neighboring gene uncharacterized oxidoreductase At1g06690, chloroplastic Neighboring gene uncharacterized LOC112326578

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor PIF4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037286.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    3776435..3780679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052450319.1 → XP_052306279.1  transcription factor PIF4 isoform X2

  2. XM_006386214.3 → XP_006386276.1  transcription factor PIF4 isoform X1

    See identical proteins and their annotated locations for XP_006386276.1

    UniProtKB/TrEMBL
    B9GSQ9
    Conserved Domains (1) summary
    smart00353
    Location:337 → 385
    HLH; helix loop helix domain

  3. XM_024594107.2 → XP_024449875.1  transcription factor PIF4 isoform X1

    UniProtKB/TrEMBL
    B9GSQ9
    Conserved Domains (1) summary
    smart00353
    Location:337 → 385
    HLH; helix loop helix domain

  4. XM_024594108.2 → XP_024449876.1  transcription factor PIF4 isoform X1

    UniProtKB/TrEMBL
    B9GSQ9
    Conserved Domains (1) summary
    smart00353
    Location:337 → 385
    HLH; helix loop helix domain

  5. XM_024594106.2 → XP_024449874.1  transcription factor PIF4 isoform X1

    UniProtKB/TrEMBL
    B9GSQ9
    Conserved Domains (1) summary
    smart00353
    Location:337 → 385
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials