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LOC7477689 zinc finger CCCH domain-containing protein 38 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7477689, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7477689
Gene description
zinc finger CCCH domain-containing protein 38
Locus tag
POPTR_007G107800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7477689 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 7 NC_037291.2 (13026824..13034427)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 7 NC_037291.1 (13143409..13151051)

Chromosome 7 - NC_037291.2Genomic Context describing neighboring genes Neighboring gene general transcription and DNA repair factor IIH subunit TFB1-1 Neighboring gene chaperone protein dnaJ 11, chloroplastic Neighboring gene U3 snoRNP-associated protein-like EMB2271 Neighboring gene transcription factor HEC3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037291.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    13026824..13034427
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024605365.2 → XP_024461133.1  zinc finger CCCH domain-containing protein 38 isoform X1

    Conserved Domains (2) summary
    smart00356
    Location:289 → 310
    ZnF_C3H1; zinc finger
    cl27535
    Location:758 → 826
    Amino_oxidase; Flavin containing amine oxidoreductase

  2. XM_002310474.4 → XP_002310510.2  zinc finger CCCH domain-containing protein 38 isoform X2

    See identical proteins and their annotated locations for XP_002310510.2

    UniProtKB/TrEMBL
    B9HEQ3
    Conserved Domains (2) summary
    smart00356
    Location:289 → 310
    ZnF_C3H1; zinc finger
    cl27535
    Location:758 → 856
    Amino_oxidase; Flavin containing amine oxidoreductase

RNA

  1. XR_002982892.2 RNA Sequence

  2. XR_002982893.2 RNA Sequence

  3. XR_002982894.2 RNA Sequence

  4. XR_002982895.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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