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LOC7475152 growth-regulating factor 4 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7475152, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7475152
Gene description
growth-regulating factor 4
Locus tag
POPTR_015G006200v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7475152 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 15 NC_037299.2 (373386..375911, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 15 NC_037299.1 (394551..397030, complement)

Chromosome 15 - NC_037299.2Genomic Context describing neighboring genes Neighboring gene pleiotropic drug resistance protein 3 Neighboring gene cytochrome P450 89A2 Neighboring gene uncharacterized LOC7464514 Neighboring gene uncharacterized LOC7464522

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: growth-regulating factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037299.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    373386..375911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002321929.4 → XP_002321965.3  LOW QUALITY PROTEIN: growth-regulating factor 4

Nucleotide Protein
Heading Accession and Version

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