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LOC7474855 transcription factor bHLH79 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7474855, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7474855
Gene description
transcription factor bHLH79
Locus tag
POPTR_015G068100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7474855 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 15 NC_037299.2 (9359725..9363137)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 15 NC_037299.1 (9265507..9268905)

Chromosome 15 - NC_037299.2Genomic Context describing neighboring genes Neighboring gene transcription factor MYB35 Neighboring gene uncharacterized LOC7474854 Neighboring gene germin-like protein subfamily T member 2 Neighboring gene serine/threonine-protein phosphatase PP2A catalytic subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH79

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037299.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    9359725..9363137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024585882.2 → XP_024441650.1  transcription factor bHLH79 isoform X2

    UniProtKB/TrEMBL
    A0A2K1XJ53
    Conserved Domains (1) summary
    cd18919
    Location:141 → 225
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  2. XM_002321510.4 → XP_002321546.2  transcription factor bHLH79 isoform X1

    See identical proteins and their annotated locations for XP_002321546.2

    UniProtKB/TrEMBL
    B9IEI7
    Conserved Domains (1) summary
    cd18919
    Location:141 → 225
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

RNA

  1. XR_008057538.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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