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LOC7469992 protein RADIALIS-like 2 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7469992, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7469992
Gene description
protein RADIALIS-like 2
Locus tag
POPTR_004G155400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7469992 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 4 NC_037288.2 (17621331..17622896)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 4 NC_037288.1 (17688118..17689671)

Chromosome 4 - NC_037288.2Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein Neighboring gene uncharacterized LOC112327147 Neighboring gene uncharacterized LOC7469993 Neighboring gene 3-ketoacyl-CoA synthase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein RADIALIS-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037288.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    17621331..17622896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024599318.2 → XP_024455086.1  protein RADIALIS-like 2

    UniProtKB/TrEMBL
    A0A2K2AV61
    Conserved Domains (1) summary
    cd00167
    Location:14 → 56
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
Heading Accession and Version

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