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LOC7469672 transcription factor bHLH18 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7469672, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7469672
Gene description
transcription factor bHLH18
Locus tag
POPTR_009G081400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7469672 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 9 NC_037293.2 (7753159..7755254)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 9 NC_037293.1 (7740780..7742880)

Chromosome 9 - NC_037293.2Genomic Context describing neighboring genes Neighboring gene soluble inorganic pyrophosphatase 6, chloroplastic Neighboring gene L-galactose dehydrogenase Neighboring gene uncharacterized LOC7478767 Neighboring gene malate dehydrogenase, glyoxysomal

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037293.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    7753159..7755254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024608340.2 → XP_024464108.1  transcription factor bHLH18 isoform X2

    UniProtKB/TrEMBL
    A0A3N7H552
    Conserved Domains (1) summary
    smart00353
    Location:150 → 198
    HLH; helix loop helix domain

  2. XM_002313911.4 → XP_002313947.2  transcription factor bHLH18 isoform X1

    See identical proteins and their annotated locations for XP_002313947.2

    UniProtKB/TrEMBL
    B9HN59
    Conserved Domains (1) summary
    smart00353
    Location:163 → 211
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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