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LOC7469327 putative protein FAR1-RELATED SEQUENCE 10 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7469327, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7469327
Gene description
putative protein FAR1-RELATED SEQUENCE 10
Locus tag
POPTR_014G167000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7469327 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 14 NC_037298.2 (12125633..12129310, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 14 NC_037298.1 (13254553..13258233, complement)

Chromosome 14 - NC_037298.2Genomic Context describing neighboring genes Neighboring gene glucose-6-phosphate 1-dehydrogenase 1, chloroplastic Neighboring gene uncharacterized LOC7469326 Neighboring gene LOB domain-containing protein 1 Neighboring gene alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative protein FAR1-RELATED SEQUENCE 10
Names
FAR1 family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037298.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    12125633..12129310 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024585636.2 → XP_024441404.1  putative protein FAR1-RELATED SEQUENCE 10

    UniProtKB/TrEMBL
    B9IAT4
    Conserved Domains (1) summary
    cl28060
    Location:26 → 668
    FAR1; FAR1 DNA-binding domain

  2. XM_024585635.2 → XP_024441403.1  putative protein FAR1-RELATED SEQUENCE 10

    UniProtKB/TrEMBL
    B9IAT4
    Conserved Domains (1) summary
    cl28060
    Location:26 → 668
    FAR1; FAR1 DNA-binding domain

  3. XM_002321161.4 → XP_002321197.1  putative protein FAR1-RELATED SEQUENCE 10

    See identical proteins and their annotated locations for XP_002321197.1

    UniProtKB/TrEMBL
    B9IAT4
    Conserved Domains (1) summary
    cl28060
    Location:26 → 668
    FAR1; FAR1 DNA-binding domain

  4. XM_052447168.1 → XP_052303128.1  putative protein FAR1-RELATED SEQUENCE 10

    UniProtKB/TrEMBL
    B9IAT4

  5. XM_052447167.1 → XP_052303127.1  putative protein FAR1-RELATED SEQUENCE 10

    UniProtKB/TrEMBL
    B9IAT4
Nucleotide Protein
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