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LOC7467599 protein REVEILLE 8 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7467599, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7467599
Gene description
protein REVEILLE 8
Locus tag
POPTR_016G083900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7467599 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
9
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 16 NC_037300.2 (6501681..6505296, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 16 NC_037300.1 (6528920..6532532, complement)

Chromosome 16 - NC_037300.2Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase L3 Neighboring gene WRKY transcription factor 44 Neighboring gene uncharacterized LOC7467600 Neighboring gene zinc finger CCCH domain-containing protein 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein REVEILLE 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037300.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    6501681..6505296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024587171.2 → XP_024442939.1  protein REVEILLE 8 isoform X3

    UniProtKB/TrEMBL
    A0A3N7HXM2
    Conserved Domains (1) summary
    TIGR01557
    Location:64 → 114
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

  2. XM_052448169.1 → XP_052304129.1  protein REVEILLE 8 isoform X3

    UniProtKB/TrEMBL
    A0A3N7HXM2

  3. XM_052448168.1 → XP_052304128.1  protein REVEILLE 8 isoform X2

    UniProtKB/TrEMBL
    A0A3N7G3U5

  4. XM_006373793.3 → XP_006373855.1  protein REVEILLE 8 isoform X1

    See identical proteins and their annotated locations for XP_006373855.1

    UniProtKB/TrEMBL
    A0A2K1XCP4
    Conserved Domains (1) summary
    TIGR01557
    Location:64 → 114
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

  5. XM_024587169.2 → XP_024442937.1  protein REVEILLE 8 isoform X1

    UniProtKB/TrEMBL
    A0A2K1XCP4
    Conserved Domains (1) summary
    TIGR01557
    Location:64 → 114
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
Nucleotide Protein
Heading Accession and Version

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