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LOC7464102 transcription factor ORG2 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7464102, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7464102
Gene description
transcription factor ORG2
Locus tag
POPTR_016G037300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7464102 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 16 NC_037300.2 (2280167..2282134, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 16 NC_037300.1 (2278010..2280002, complement)

Chromosome 16 - NC_037300.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18106107 Neighboring gene uncharacterized LOC112324509 Neighboring gene uncharacterized LOC7464103 Neighboring gene uncharacterized LOC7464104

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ORG2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037300.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    2280167..2282134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024587625.2 → XP_024443393.1  transcription factor ORG2 isoform X2

    Conserved Domains (1) summary
    pfam00010
    Location:71 → 122
    HLH; Helix-loop-helix DNA-binding domain

  2. XM_002323214.4 → XP_002323250.2  transcription factor ORG2 isoform X1

    See identical proteins and their annotated locations for XP_002323250.2

    UniProtKB/TrEMBL
    B9IHR7
    Conserved Domains (1) summary
    cd00083
    Location:71 → 127
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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