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LOC7461722 LOB domain-containing protein 30 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7461722, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7461722
Gene description
LOB domain-containing protein 30
Locus tag
POPTR_002G149000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7461722 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 2 NC_037286.2 (11217683..11220926)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 2 NC_037286.1 (11071140..11074543)

Chromosome 2 - NC_037286.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127904977 Neighboring gene LOB domain-containing protein 19 Neighboring gene brefeldin A-inhibited guanine nucleotide-exchange protein 2 Neighboring gene AT-hook motif nuclear-localized protein 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOB domain-containing protein 30
Names
LBD family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037286.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    11217683..11220926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002301259.4 → XP_002301295.2  LOB domain-containing protein 30

    See identical proteins and their annotated locations for XP_002301295.2

    UniProtKB/TrEMBL
    B9GPH4
    Conserved Domains (1) summary
    pfam03195
    Location:33 → 132
    DUF260; Protein of unknown function DUF260
Nucleotide Protein
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