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LOC7458773 protein tesmin/TSO1-like CXC 5 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7458773, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7458773
Gene description
protein tesmin/TSO1-like CXC 5
Locus tag
POPTR_018G083000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7458773 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
9
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 18 NC_037302.2 (10058908..10067678, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 18 NC_037302.1 (10981751..10991230, complement)

Chromosome 18 - NC_037302.2Genomic Context describing neighboring genes Neighboring gene protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial Neighboring gene peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 Neighboring gene uncharacterized LOC7476292 Neighboring gene probable plastidic glucose transporter 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037302.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    10058908..10067678 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024590665.2 → XP_024446433.2  LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5

Nucleotide Protein
Heading Accession and Version

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