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LOC7458594 transcription factor bHLH113 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7458594, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7458594
Gene description
transcription factor bHLH113
Locus tag
POPTR_010G208600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7458594 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 10 NC_037294.2 (19829321..19831578, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 10 NC_037294.1 (19822743..19825170, complement)

Chromosome 10 - NC_037294.2Genomic Context describing neighboring genes Neighboring gene elongator complex protein 1 Neighboring gene actin-depolymerizing factor 1 Neighboring gene 40S ribosomal protein S15a-1 Neighboring gene ras-related protein RABE1c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH113

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037294.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    19829321..19831578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024611259.2 → XP_024467027.1  transcription factor bHLH113 isoform X4

  2. XM_024611258.2 → XP_024467026.1  transcription factor bHLH113 isoform X3

  3. XM_024611257.2 → XP_024467025.1  transcription factor bHLH113 isoform X2

    UniProtKB/TrEMBL
    A0A3N7H544

  4. XM_024611256.2 → XP_024467024.1  transcription factor bHLH113 isoform X1

    UniProtKB/TrEMBL
    A0A2K1YXN1
    Conserved Domains (1) summary
    smart00353
    Location:111 → 154
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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