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LOC7457390 transcription factor CPC [ Populus trichocarpa (black cottonwood) ]

Gene ID: 7457390, updated on 23-Nov-2023

Summary

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Gene symbol
LOC7457390
Gene description
transcription factor CPC
Locus tag
POPTR_002G168900v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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See LOC7457390 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 2 NC_037286.2 (12968642..12970324, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 2 NC_037286.1 (12796684..12798366, complement)

Chromosome 2 - NC_037286.2Genomic Context describing neighboring genes Neighboring gene probable WRKY transcription factor 46 Neighboring gene uncharacterized LOC112326465 Neighboring gene uncharacterized LOC112326597 Neighboring gene rhodanese-like domain-containing protein 4, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor CPC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037286.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    12968642..12970324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024594988.2 → XP_024450756.1  transcription factor CPC isoform X1

    UniProtKB/TrEMBL
    A0A2K2BK20, A0A3N7ELB4
    Conserved Domains (1) summary
    cl28544
    Location:42 → 80
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

  2. XM_024594989.2 → XP_024450757.1  transcription factor CPC isoform X2

    UniProtKB/TrEMBL
    A0A3N7FZK8, B9GQZ8
    Conserved Domains (1) summary
    cl28544
    Location:30 → 68
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Nucleotide Protein
Heading Accession and Version

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