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met rubisco small subunit small subunit n-methyltransferase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7453455, updated on 21-Dec-2023

Summary

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Gene symbol
met
Gene description
rubisco small subunit small subunit n-methyltransferase
Locus tag
THAPSDRAFT_14655
Gene type
protein coding
RNA name
rubisco small subunit small subunit n-methyltransferase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See met in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_012064.1 (783084..784489)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene lipoic acid synthetase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-lysine N-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine monomethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
rubisco small subunit small subunit n-methyltransferase
XP_002286075.1
  • Regulation of rubisco activity, clear best hit with Gtheta thus indicating secondary gene transfer, EST support from P.tricornutum

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    783084..784489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286039.1 → XP_002286075.1  rubisco small subunit small subunit n-methyltransferase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286075.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BQ32
    Conserved Domains (1) summary
    pfam09273
    Location:315 → 430
    Rubis-subs-bind; Rubisco LSMT substrate-binding
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials