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GAPD4 glyceraldehyde-3-phosphate dehydrogenase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7453188, updated on 21-Dec-2023

Summary

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Gene symbol
GAPD4
Gene description
glyceraldehyde-3-phosphate dehydrogenase
Locus tag
THAPSDRAFT_28334
Gene type
protein coding
RNA name
glyceraldehyde-3-phosphate dehydrogenase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See GAPD4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_012068.1 (1304438..1305889)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene nuclear copy of photosystem II protein psbW

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
glyceraldehyde-3-phosphate dehydrogenase
XP_002290288.1
  • D-glyceraldehyde 3-phosphate + phosphate + NAD = 3-phospho-D-glyceroyl phosphate + NADH2; putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    1304438..1305889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290252.1 → XP_002290288.1  glyceraldehyde-3-phosphate dehydrogenase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290288.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C303
    Conserved Domains (3) summary
    PTZ00023
    Location:1 → 343
    PTZ00023; glyceraldehyde-3-phosphate dehydrogenase; Provisional
    pfam00044
    Location:3 → 158
    Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
    pfam02800
    Location:163 → 322
    Gp_dh_C; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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