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THAPSDRAFT_28330 probable bifunctional purine synthesis protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7453186, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_28330
Gene description
probable bifunctional purine synthesis protein
Locus tag
THAPSDRAFT_28330
Gene type
protein coding
RNA name
probable bifunctional purine synthesis protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_28330 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_012068.1 (1298062..1300405, complement)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables IMP cyclohydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' IMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
probable bifunctional purine synthesis protein
XP_002290720.1
  • Probable bifunctional purine synthesis protein (Phosphoribosylaminoimidazolecarboxamide formyltransferase) (AICAR transformylase) (IMP cyclohydrolase) (Inosinicase) (IMP synthetase) (ATIC), similar to gi|1709915|sp|P38009|PU92_YEAST Bifunctional purine biosynthesis protein ADE17 [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] (model%: 96, hit%: 98, score: 1407, %id: 49) [Saccharomyces cerevisiae]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    1298062..1300405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290684.1 → XP_002290720.1  probable bifunctional purine synthesis protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290720.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C300
    Conserved Domains (3) summary
    PRK07106
    Location:222 → 616
    PRK07106; 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
    COG0138
    Location:17 → 616
    PurH; AICAR transformylase/IMP cyclohydrolase PurH [Nucleotide transport and metabolism]
    cd01421
    Location:20 → 205
    IMPCH; Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates ...
Nucleotide Protein
Heading Accession and Version

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