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THAPSDRAFT_262535 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7453182, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_262535
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_262535
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_262535 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_012068.1 (1256828..1259758)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene selenocysteine-specific elongation factor SelB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002290285.1
  • unknown protein with similarity to kinesin light chains

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    1256828..1259758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290249.1 → XP_002290285.1  hypothetical protein THAPSDRAFT_262535 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290285.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C2Z4
    Conserved Domains (6) summary
    COG0457
    Location:531 → 854
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:553 → 581
    TPR; TPR repeat [structural motif]
    pfam13176
    Location:681 → 716
    TPR_7; Tetratricopeptide repeat
    pfam13374
    Location:510 → 551
    TPR_10; Tetratricopeptide repeat
    pfam13414
    Location:365 → 442
    TPR_11; TPR repeat
    pfam13424
    Location:450 → 543
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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