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NIR_2 nitrite reductase-ferredoxin dependent [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7453154, updated on 21-Dec-2023

Summary

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Gene symbol
NIR_2
Gene description
nitrite reductase-ferredoxin dependent
Locus tag
THAPSDRAFT_262125
Gene type
protein coding
RNA name
nitrite reductase-ferredoxin dependent
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See NIR_2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_012067.1 (795965..797811)

Chromosome 4 - NC_012067.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene centrin-like protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012067.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron-sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
nitrite reductase-ferredoxin dependent
XP_002289265.1
  • Putatively chloroplast targeted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012067.1 Reference assembly

    Range
    795965..797811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002289229.1 → XP_002289265.1  nitrite reductase-ferredoxin dependent, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289265.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BZ06
    Conserved Domains (3) summary
    PRK09566
    Location:10 → 545
    nirA; ferredoxin-nitrite reductase; Reviewed
    pfam01077
    Location:152 → 313
    NIR_SIR; Nitrite and sulphite reductase 4Fe-4S domain
    pfam03460
    Location:73 → 137
    NIR_SIR_ferr; Nitrite/Sulfite reductase ferredoxin-like half domain
Nucleotide Protein
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Molecular Biology Databases
Research Materials