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THAPSDRAFT_264438 peroxisomal targeting signal receptor [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7453144, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_264438
Gene description
peroxisomal targeting signal receptor
Locus tag
THAPSDRAFT_264438
Gene type
protein coding
RNA name
peroxisomal targeting signal receptor
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_264438 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
2
Sequence:
Chromosome: 17; NC_012080.1 (249710..250629)

Chromosome 17 - NC_012080.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012080.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peroxisome matrix targeting signal-1 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into peroxisome matrix, docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
peroxisomal targeting signal receptor
XP_002294361.1
  • Hits to peroxisomal targeting signal receptor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012080.1 Reference assembly

    Range
    249710..250629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294325.1 → XP_002294361.1  peroxisomal targeting signal receptor, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294361.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CE24
    Conserved Domains (3) summary
    sd00006
    Location:150 → 178
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:218 → 250
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:150 → 215
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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Research Materials