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THAPSDRAFT_37156 ribose-phosphat pyrophosphokinase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7453011, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_37156
Gene description
ribose-phosphat pyrophosphokinase
Locus tag
THAPSDRAFT_37156
Gene type
protein coding
RNA name
ribose-phosphat pyrophosphokinase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 13
Exon count:
3
Sequence:
Chromosome: 13; NC_012076.1 (331703..332908, complement)

Chromosome 13 - NC_012076.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012076.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribose phosphate diphosphokinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 5-phosphoribose 1-diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in purine nucleotide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribose phosphate diphosphokinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ribose-phosphat pyrophosphokinase
XP_002293535.1
  • based on sequence similarity and presence of defining domains. Likely catalyzes the transfer of an intact diphosphate (PP) group from ATP to ribose-5-phosphate (R-5-P), which results in the formation of AMP and 5-phospho-D-ribosyl--1-diphosphate (PRPP).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012076.1 Reference assembly

    Range
    331703..332908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293499.1 → XP_002293535.1  ribose-phosphat pyrophosphokinase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293535.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CB80
    Conserved Domains (3) summary
    PLN02369
    Location:8 → 318
    PLN02369; ribose-phosphate pyrophosphokinase
    pfam13793
    Location:1 → 114
    Pribosyltran_N; N-terminal domain of ribose phosphate pyrophosphokinase
    cl00309
    Location:208 → 306
    PRTases_typeI; Phosphoribosyl transferase (PRT)-type I domain
Nucleotide Protein
Heading Accession and Version

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